Partition function for two RNA sequences. More...
Include dependency graph for part_func_co.h:Go to the source code of this file.
Functions | |
| vrna_dimer_pf_t | co_pf_fold (char *sequence, char *structure) |
| Calculate partition function and base pair probabilities. More... | |
| vrna_dimer_pf_t | co_pf_fold_par (char *sequence, char *structure, vrna_exp_param_t *parameters, int calculate_bppm, int is_constrained) |
| Calculate partition function and base pair probabilities. More... | |
| vrna_ep_t * | get_plist (vrna_ep_t *pl, int length, double cut_off) |
| void | compute_probabilities (double FAB, double FEA, double FEB, vrna_ep_t *prAB, vrna_ep_t *prA, vrna_ep_t *prB, int Alength) |
| Compute Boltzmann probabilities of dimerization without homodimers. More... | |
| void | init_co_pf_fold (int length) |
| FLT_OR_DBL * | export_co_bppm (void) |
| Get a pointer to the base pair probability array. More... | |
| void | free_co_pf_arrays (void) |
| Free the memory occupied by co_pf_fold() More... | |
| void | update_co_pf_params (int length) |
| Recalculate energy parameters. More... | |
| void | update_co_pf_params_par (int length, vrna_exp_param_t *parameters) |
| Recalculate energy parameters. More... | |
Variables | |
| int | mirnatog |
| Toggles no intrabp in 2nd mol. | |
| double | F_monomer [2] |
| Free energies of the two monomers. | |
Detailed Description
Partition function for two RNA sequences.
Function Documentation
DO NOT USE THIS FUNCTION ANYMORE
- Deprecated:
- { This function is deprecated and will be removed soon!} use assign_plist_from_pr() instead!
