part_func_co.h

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#ifndef VIENNA_RNA_PACKAGE_PART_FUNC_CO_H
#define VIENNA_RNA_PACKAGE_PART_FUNC_CO_H

#ifdef VRNA_WARN_DEPRECATED
# if defined(__clang__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
# elif defined(__GNUC__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
# else
#  define DEPRECATED(func, msg) func
# endif
#else
# define DEPRECATED(func, msg) func
#endif

#include <ViennaRNA/datastructures/basic.h>
#include <ViennaRNA/params/basic.h>
#include <ViennaRNA/part_func.h>
#include <ViennaRNA/equilibrium_probs.h>
#include <ViennaRNA/concentrations.h>
#include <ViennaRNA/utils/structures.h>

extern int    mirnatog;

extern double F_monomer[2];

#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

/*
 #################################################
 # DEPRECATED FUNCTIONS                          #
 #################################################
 */

DEPRECATED(vrna_dimer_pf_t co_pf_fold(char  *sequence,
                                      char  *structure),
"Use vrna_pf_co_fold() or vrna_pf_dimer() instead");

DEPRECATED(vrna_dimer_pf_t co_pf_fold_par(char              *sequence,
                                          char              *structure,
                                          vrna_exp_param_t  *parameters,
                                          int               calculate_bppm,
                                          int               is_constrained),
"Use the new API and vrna_pf_dimer() instead");

DEPRECATED(vrna_ep_t *get_plist(vrna_ep_t *pl,
                                int       length,
                                double    cut_off),
"Use vrna_plist() and vrna_plist_from_probs() instead");

DEPRECATED(void compute_probabilities(double    FAB,
                                      double    FEA,
                                      double    FEB,
                                      vrna_ep_t *prAB,
                                      vrna_ep_t *prA,
                                      vrna_ep_t *prB,
                                      int       Alength),
"Use vrna_pf_dimer_probs() instead");

DEPRECATED(void   init_co_pf_fold(int length),
"This function is obsolete");

DEPRECATED(FLT_OR_DBL *export_co_bppm(void),
"Use the new API with vrna_fold_compound_t instead");

DEPRECATED(void free_co_pf_arrays(void),
"This function is obsolete");

DEPRECATED(void update_co_pf_params(int length),
"This function is obsolete");

DEPRECATED(void update_co_pf_params_par(int               length,
                                        vrna_exp_param_t  *parameters),
"Use the new API with vrna_fold_compound_t instead");

#endif

#endif