part_func_up.h File Reference

Implementations for accessibility and RNA-RNA interaction as a stepwise process. More...

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Functions
pu_contrib *	pf_unstru (char *sequence, int max_w)
	Calculate the partition function over all unpaired regions of a maximal length. More...
interact *	pf_interact (const char *s1, const char *s2, pu_contrib *p_c, pu_contrib *p_c2, int max_w, char *cstruc, int incr3, int incr5)
	Calculates the probability of a local interaction between two sequences. More...
void	free_interact (interact *pin)
	Frees the output of function pf_interact().
void	free_pu_contrib_struct (pu_contrib *pu)
	Frees the output of function pf_unstru().

Detailed Description

Implementations for accessibility and RNA-RNA interaction as a stepwise process.