part_func_up.h

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#ifndef VIENNA_RNA_PACKAGE_PART_FUNC_UP_H
#define VIENNA_RNA_PACKAGE_PART_FUNC_UP_H

#include <ViennaRNA/datastructures/basic.h>

#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

#define   RNA_UP_MODE_1   1U
#define   RNA_UP_MODE_2   2U
#define   RNA_UP_MODE_3   4U

pu_contrib *pf_unstru(char *sequence,
                      int max_w);

interact *pf_interact(const char *s1,
                      const char *s2,
                      pu_contrib *p_c,
                      pu_contrib *p_c2,
                      int max_w,
                      char *cstruc,
                      int incr3,
                      int incr5);

void free_interact(interact *pin);

int Up_plot(pu_contrib *p_c,
            pu_contrib *p_c_sh,
            interact *pint,
            char *ofile,
            int **unpaired_values,
            char *select_contrib,
            char *head,
            unsigned int mode);

pu_contrib  *get_pu_contrib_struct( unsigned int n,
                                    unsigned int w);

void        free_pu_contrib_struct(pu_contrib *pu);

void
free_pu_contrib(pu_contrib *pu);

#endif

#endif