bpp-phyl-omics
2.2.0
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Partial implementation for phylogeny reconstruction iterator. More...
#include <Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h>
Public Member Functions | |
AbstractPhylogenyReconstructionMafIterator (MafIterator *iterator) | |
virtual | ~AbstractPhylogenyReconstructionMafIterator () |
virtual std::string | getPropertyName () const =0 |
virtual Tree * | buildTreeForBlock (const MafBlock &block)=0 |
Private Member Functions | |
MafBlock * | analyseCurrentBlock_ () throw (Exception) |
Partial implementation for phylogeny reconstruction iterator.
This iterator calls a tree reconstruction method (to be implemented by the derivated class) and store the resulting tree as an associated block property for the block, before forwarding it.
Definition at line 55 of file AbstractPhylogenyReconstructionMafIterator.h.
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inline |
Definition at line 59 of file AbstractPhylogenyReconstructionMafIterator.h.
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inlinevirtual |
Definition at line 63 of file AbstractPhylogenyReconstructionMafIterator.h.
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inlineprivate |
Definition at line 66 of file AbstractPhylogenyReconstructionMafIterator.h.
References buildTreeForBlock(), and getPropertyName().
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pure virtual |
Implemented in bpp::DistanceBasedPhylogenyReconstructionMafIterator.
Referenced by analyseCurrentBlock_().
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pure virtual |
Implemented in bpp::DistanceBasedPhylogenyReconstructionMafIterator.
Referenced by analyseCurrentBlock_().