bpp-phyl-omics  2.2.0
bpp::AbstractPhylogenyReconstructionMafIterator Class Referenceabstract

Partial implementation for phylogeny reconstruction iterator. More...

#include <Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h>

+ Inheritance diagram for bpp::AbstractPhylogenyReconstructionMafIterator:
+ Collaboration diagram for bpp::AbstractPhylogenyReconstructionMafIterator:

Public Member Functions

 AbstractPhylogenyReconstructionMafIterator (MafIterator *iterator)
 
virtual ~AbstractPhylogenyReconstructionMafIterator ()
 
virtual std::string getPropertyName () const =0
 
virtual Tree * buildTreeForBlock (const MafBlock &block)=0
 

Private Member Functions

MafBlock * analyseCurrentBlock_ () throw (Exception)
 

Detailed Description

Partial implementation for phylogeny reconstruction iterator.

This iterator calls a tree reconstruction method (to be implemented by the derivated class) and store the resulting tree as an associated block property for the block, before forwarding it.

Definition at line 55 of file AbstractPhylogenyReconstructionMafIterator.h.

Constructor & Destructor Documentation

◆ AbstractPhylogenyReconstructionMafIterator()

bpp::AbstractPhylogenyReconstructionMafIterator::AbstractPhylogenyReconstructionMafIterator ( MafIterator *  iterator)
inline

Definition at line 59 of file AbstractPhylogenyReconstructionMafIterator.h.

◆ ~AbstractPhylogenyReconstructionMafIterator()

virtual bpp::AbstractPhylogenyReconstructionMafIterator::~AbstractPhylogenyReconstructionMafIterator ( )
inlinevirtual

Definition at line 63 of file AbstractPhylogenyReconstructionMafIterator.h.

Member Function Documentation

◆ analyseCurrentBlock_()

MafBlock* bpp::AbstractPhylogenyReconstructionMafIterator::analyseCurrentBlock_ ( )
throw (Exception
)
inlineprivate

◆ buildTreeForBlock()

virtual Tree* bpp::AbstractPhylogenyReconstructionMafIterator::buildTreeForBlock ( const MafBlock &  block)
pure virtual

◆ getPropertyName()

virtual std::string bpp::AbstractPhylogenyReconstructionMafIterator::getPropertyName ( ) const
pure virtual

The documentation for this class was generated from the following file: