Implementation for distance-based phylogeny reconstruction iterator. More...

#include <Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h>

Inheritance diagram for bpp::DistanceBasedPhylogenyReconstructionMafIterator:

Collaboration diagram for bpp::DistanceBasedPhylogenyReconstructionMafIterator:

Public Member Functions
	DistanceBasedPhylogenyReconstructionMafIterator (MafIterator iterator, DistanceMethod method, const std::string &property)

void	setDistanceProperty (const std::string &property)

const std::string &	getDistanceProperty () const

std::string	getPropertyName () const

Tree *	buildTreeForBlock (const MafBlock &block) throw (Exception)

Private Member Functions
	DistanceBasedPhylogenyReconstructionMafIterator (const DistanceBasedPhylogenyReconstructionMafIterator &it)

DistanceBasedPhylogenyReconstructionMafIterator &	operator= (const DistanceBasedPhylogenyReconstructionMafIterator &it)

Private Attributes
std::string	distanceProperty_

std::auto_ptr< DistanceMethod >	builder_

Detailed Description

Implementation for distance-based phylogeny reconstruction iterator.

Definition at line 51 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

Constructor & Destructor Documentation

◆ DistanceBasedPhylogenyReconstructionMafIterator() [1/2]

bpp::DistanceBasedPhylogenyReconstructionMafIterator::DistanceBasedPhylogenyReconstructionMafIterator	(	MafIterator *	iterator,
		DistanceMethod *	method,
		const std::string &	property
	)

inline

Definition at line 59 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

◆ DistanceBasedPhylogenyReconstructionMafIterator() [2/2]

bpp::DistanceBasedPhylogenyReconstructionMafIterator::DistanceBasedPhylogenyReconstructionMafIterator ( const DistanceBasedPhylogenyReconstructionMafIterator & it )

inlineprivate

Definition at line 65 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

Member Function Documentation

◆ buildTreeForBlock()

Tree * DistanceBasedPhylogenyReconstructionMafIterator::buildTreeForBlock	(	const MafBlock &	block	)
throw	(	Exception
	)

virtual

Implements bpp::AbstractPhylogenyReconstructionMafIterator.

Definition at line 47 of file DistanceBasedPhylogenyReconstructionMafIterator.cpp.

◆ getDistanceProperty()

const std::string& bpp::DistanceBasedPhylogenyReconstructionMafIterator::getDistanceProperty ( ) const

inline

Definition at line 79 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

References distanceProperty_.

◆ getPropertyName()

std::string bpp::DistanceBasedPhylogenyReconstructionMafIterator::getPropertyName ( ) const

inlinevirtual

Implements bpp::AbstractPhylogenyReconstructionMafIterator.

Definition at line 81 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

References builder_.

◆ operator=()

DistanceBasedPhylogenyReconstructionMafIterator& bpp::DistanceBasedPhylogenyReconstructionMafIterator::operator= ( const DistanceBasedPhylogenyReconstructionMafIterator & it )

inlineprivate

Definition at line 71 of file DistanceBasedPhylogenyReconstructionMafIterator.h.

References distanceProperty_.