bpp::NewOutgroupMafIterator Class Reference

This iterator root associated trees according to an outgroup sequence. More...

#include <Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h>

Inheritance diagram for bpp::NewOutgroupMafIterator:

Collaboration diagram for bpp::NewOutgroupMafIterator:

Public Member Functions
	NewOutgroupMafIterator (MafIterator *iterator, const std::string &treePropertyRead, const std::string &treePropertyWrite, const std::string &outgroupSpecies)
MafBlock *	analyseCurrentBlock_ () throw (Exception)

Private Member Functions
void	manipulateTree_ (TreeTemplate< Node > *tree) throw (Exception)

Private Attributes
std::string	outgroupSpecies_

Detailed Description

This iterator root associated trees according to an outgroup sequence.

Definition at line 79 of file TreeManipulationMafIterators.h.

Constructor & Destructor Documentation

NewOutgroupMafIterator()

bpp::NewOutgroupMafIterator::NewOutgroupMafIterator ( MafIterator *  iterator, const std::string &  treePropertyRead, const std::string &  treePropertyWrite, const std::string &  outgroupSpecies  )

inline

Definition at line 87 of file TreeManipulationMafIterators.h.

Member Function Documentation

analyseCurrentBlock_()

MafBlock * TreeManipulationMafIterator::analyseCurrentBlock_ ( ) throw ( Exception )

inherited

Definition at line 45 of file TreeManipulationMafIterators.cpp.

manipulateTree_()

void NewOutgroupMafIterator::manipulateTree_ ( TreeTemplate< Node > *  tree ) throw ( Exception )

privatevirtual

Implements bpp::TreeManipulationMafIterator.

Definition at line 63 of file TreeManipulationMafIterators.cpp.

Member Data Documentation

outgroupSpecies_

std::string bpp::NewOutgroupMafIterator::outgroupSpecies_

private

Definition at line 83 of file TreeManipulationMafIterators.h.

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h
• Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp