bpp::TreeManipulationMafIterator Class Reference

This iterator root associated trees according to an outgroup sequence. More...

#include <Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h>

Inheritance diagram for bpp::TreeManipulationMafIterator:

Collaboration diagram for bpp::TreeManipulationMafIterator:

Public Member Functions
	TreeManipulationMafIterator (MafIterator *iterator, const std::string &treePropertyRead, const std::string &treePropertyWrite)
MafBlock *	analyseCurrentBlock_ () throw (Exception)

Protected Member Functions
virtual void	manipulateTree_ (TreeTemplate< Node > *tree)=0 throw (Exception)

Private Attributes
std::string	treePropertyRead_
std::string	treePropertyWrite_

Detailed Description

This iterator root associated trees according to an outgroup sequence.

Definition at line 53 of file TreeManipulationMafIterators.h.

Constructor & Destructor Documentation

TreeManipulationMafIterator()

bpp::TreeManipulationMafIterator::TreeManipulationMafIterator ( MafIterator *  iterator, const std::string &  treePropertyRead, const std::string &  treePropertyWrite  )

inline

Definition at line 62 of file TreeManipulationMafIterators.h.

Member Function Documentation

analyseCurrentBlock_()

MafBlock * TreeManipulationMafIterator::analyseCurrentBlock_	(		)
throw	(	Exception
	)

Definition at line 45 of file TreeManipulationMafIterators.cpp.

manipulateTree_()

virtual void bpp::TreeManipulationMafIterator::manipulateTree_ ( TreeTemplate< Node > *  tree ) throw ( Exception )

protectedpure virtual

Implemented in bpp::DropSpeciesMafIterator, and bpp::NewOutgroupMafIterator.

Member Data Documentation

treePropertyRead_

std::string bpp::TreeManipulationMafIterator::treePropertyRead_

private

Definition at line 57 of file TreeManipulationMafIterators.h.

treePropertyWrite_

std::string bpp::TreeManipulationMafIterator::treePropertyWrite_

private

Definition at line 58 of file TreeManipulationMafIterators.h.

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h
• Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp