DistanceEstimation.h File Reference

#include "../Model/SubstitutionModel.h"
#include "../Likelihood/AbstractTreeLikelihood.h"
#include "../Likelihood/DRHomogeneousTreeLikelihood.h"
#include "../Likelihood/PseudoNewtonOptimizer.h"
#include <Bpp/Clonable.h>
#include <Bpp/Numeric/ParameterList.h>
#include <Bpp/Numeric/Prob/DiscreteDistribution.h>
#include <Bpp/Numeric/Function/Optimizer.h>
#include <Bpp/Numeric/Function/SimpleMultiDimensions.h>
#include <Bpp/Numeric/Function/MetaOptimizer.h>
#include <Bpp/Seq/Container/SiteContainer.h>

Include dependency graph for DistanceEstimation.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	bpp::TwoTreeLikelihood
	This class is a simplified version of DRHomogeneousTreeLikelihood for 2-Trees. More...
class	bpp::DistanceEstimation
	Estimate a distance matrix from sequence data, according to a given model. More...

Namespaces
	bpp