FrequenciesSet.h File Reference

#include "../StateMap.h"
#include <Bpp/Numeric/Parametrizable.h>
#include <Bpp/Numeric/AbstractParametrizable.h>
#include <Bpp/Numeric/VectorTools.h>
#include <Bpp/Numeric/Prob/Simplex.h>
#include <Bpp/Seq/Alphabet/Alphabet.h>

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Classes
class	bpp::FrequenciesSet
	Parametrize a set of state frequencies. More...
class	bpp::AbstractFrequenciesSet
	Basic implementation of the FrequenciesSet interface. More...
class	bpp::FullFrequenciesSet
	A generic FrequenciesSet allowing for the estimation of all frequencies. More...
class	bpp::MarkovModulatedFrequenciesSet
	FrequenciesSet to be used with a Markov-modulated substitution model. More...
class	bpp::FixedFrequenciesSet
	FrequenciesSet useful for homogeneous and stationary models. More...

Namespaces
	bpp