43 #include "../MixtureOfSubstitutionModels.h" 45 #include "../AbstractSubstitutionModel.h" 46 #include "../AbstractBiblioMixedSubstitutionModel.h" 124 std::string
getName()
const {
return "LLG08_EX3"; }
134 #endif // _LLG08_EX3_H_ The Le et al (2008) EX3 substitution model for proteins.
Interface for all substitution models.
Abstract class for mixture models based on the bibliography.
Specialized interface for protein substitution model.
SubstitutionModel & getModel()
double getProportion() const
EmbeddedModel * clone() const
Partial implementation of the ReversibleSubstitutionModel interface.
std::string getName() const
Get the name of the model.
string getName() const
Get the name of the model.
MixedSubstitutionModel & getMixedModel()
const SubstitutionModel & getModel() const
const MixedSubstitutionModel & getMixedModel() const
std::auto_ptr< MixtureOfSubstitutionModels > pmixmodel_
Interface for Substitution models, defined as a mixture of "simple" substitution models.
LLG08_EX3 * clone() const