OptimizationTools.h File Reference

#include "Likelihood/ClockTreeLikelihood.h"
#include "Likelihood/NNIHomogeneousTreeLikelihood.h"
#include "NNITopologySearch.h"
#include "Parsimony/DRTreeParsimonyScore.h"
#include "TreeTemplate.h"
#include "Distance/DistanceEstimation.h"
#include "Distance/DistanceMethod.h"
#include <Bpp/Io/OutputStream.h>
#include <Bpp/App/ApplicationTools.h>
#include <Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h>

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Classes
class	bpp::NaNListener
	A listener which capture NaN function values and throw an exception in case this happens. More...
class	bpp::NNITopologyListener
	Listener used internally by the optimizeTreeNNI method. More...
class	bpp::NNITopologyListener2
	Listener used internally by the optimizeTreeNNI2 method. More...
class	bpp::OptimizationTools
	Optimization methods for phylogenetic inference. More...
class	bpp::OptimizationTools::ScaleFunction

Namespaces
	bpp