SubstitutionModel.h File Reference

#include "FrequenciesSet/FrequenciesSet.h"
#include "StateMap.h"
#include <Bpp/Exceptions.h>
#include <Bpp/Numeric/Parameter.h>
#include <Bpp/Numeric/ParameterList.h>
#include <Bpp/Numeric/ParameterAliasable.h>
#include <Bpp/Numeric/VectorTools.h>
#include <Bpp/Numeric/Matrix/Matrix.h>
#include <Bpp/Seq/Alphabet/Alphabet.h>
#include <Bpp/Seq/Container/SequenceContainer.h>
#include <cstdlib>
#include <map>
#include <string>

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Classes
class	bpp::SubstitutionModelException
	Exception that may be thrown by susbstitution models. More...
class	bpp::SubstitutionModel
	Interface for all substitution models. More...
class	bpp::ReversibleSubstitutionModel
	Interface for reversible substitution models. More...

Namespaces
	bpp