Partial implementation of the IDistanceMatrix interface. More...

#include <Bpp/Phyl/Io/IoDistanceMatrix.h>

Inheritance diagram for bpp::AbstractIDistanceMatrix:

Collaboration diagram for bpp::AbstractIDistanceMatrix:

Public Member Functions
	AbstractIDistanceMatrix ()

virtual	~AbstractIDistanceMatrix ()

virtual DistanceMatrix *	read (const std::string &path) const throw (Exception)
	Read a distance matrix from a file. More...

virtual DistanceMatrix *	read (std::istream &in) const =0 throw (Exception)
	Read a distance matrix from a stream. More...

virtual const std::string	getDataType () const

Detailed Description

Partial implementation of the IDistanceMatrix interface.

Definition at line 131 of file IoDistanceMatrix.h.

Constructor & Destructor Documentation

◆ AbstractIDistanceMatrix()

bpp::AbstractIDistanceMatrix::AbstractIDistanceMatrix ( )

inline

Definition at line 135 of file IoDistanceMatrix.h.

◆ ~AbstractIDistanceMatrix()

virtual bpp::AbstractIDistanceMatrix::~AbstractIDistanceMatrix ( )

inlinevirtual

Definition at line 136 of file IoDistanceMatrix.h.

Member Function Documentation

◆ getDataType()

virtual const std::string bpp::IODistanceMatrix::getDataType ( ) const

inlinevirtualinherited

Definition at line 65 of file IoDistanceMatrix.h.

◆ read() [1/2]

virtual DistanceMatrix* bpp::AbstractIDistanceMatrix::read	(	const std::string &	path	)	const
throw	(	Exception
	)

inlinevirtual

Read a distance matrix from a file.

Parameters

path	The file path.

Returns: A new distance matrix object.

Exceptions

Exception If an error occured.

Implements bpp::IDistanceMatrix.

Reimplemented in bpp::PhylipDistanceMatrixFormat.

Definition at line 139 of file IoDistanceMatrix.h.

Referenced by bpp::PhylipDistanceMatrixFormat::read().

◆ read() [2/2]

virtual DistanceMatrix* bpp::AbstractIDistanceMatrix::read	(	std::istream &	in	)	const
throw	(	Exception
	)

pure virtual

Read a distance matrix from a stream.