bpp::MixedSubstitutionModelSet::HyperNode::Node Class Reference

#include <Bpp/Phyl/Model/MixedSubstitutionModelSet.h>

Public Member Functions
	Node ()
	Node (const Node &n)
Node &	operator= (const Node &n)
	~Node ()
Node &	operator= (const Vint &n)
void	insertN (const Vint &vn)
size_t	size () const
Node &	operator+= (const Node &)
	Cumulates the elements of the given Node into this one. More...
bool	operator<= (const Node &) const
	checks if this Node is included in another one. More...
bool	operator>= (const Node &) const
	checks if this HyperNode includes another one. More...
bool	intersects (const Node &) const
	checks if this Node intersects another one. More...
int	operator[] (size_t i) const

Private Attributes
Vint	vNumb_
	A vector<int> where all elements are different and in increasing order. More...

Detailed Description

Definition at line 128 of file MixedSubstitutionModelSet.h.

Constructor & Destructor Documentation

Node() [1/2]

bpp::MixedSubstitutionModelSet::HyperNode::Node::Node ( )

inline

Definition at line 137 of file MixedSubstitutionModelSet.h.

Node() [2/2]

bpp::MixedSubstitutionModelSet::HyperNode::Node::Node ( const Node &  n )

inline

Definition at line 138 of file MixedSubstitutionModelSet.h.

~Node()

bpp::MixedSubstitutionModelSet::HyperNode::Node::~Node ( )

inline

Definition at line 145 of file MixedSubstitutionModelSet.h.

Member Function Documentation

insertN()

void MixedSubstitutionModelSet::HyperNode::Node::insertN

(

const Vint &

vn

)

Definition at line 417 of file MixedSubstitutionModelSet.cpp.

intersects()

bool MixedSubstitutionModelSet::HyperNode::Node::intersects

(

const Node &

n

)

const

checks if this Node intersects another one.

Definition at line 464 of file MixedSubstitutionModelSet.cpp.

References vNumb_.

operator+=()

MixedSubstitutionModelSet::HyperNode::Node & MixedSubstitutionModelSet::HyperNode::Node::operator+=

(

const Node &

n

)

Cumulates the elements of the given Node into this one.

Definition at line 436 of file MixedSubstitutionModelSet.cpp.

References vNumb_.

operator<=()

bool MixedSubstitutionModelSet::HyperNode::Node::operator<=

(

const Node &

n

)

const

checks if this Node is included in another one.

Definition at line 443 of file MixedSubstitutionModelSet.cpp.

References vNumb_.

operator=() [1/2]

Node& bpp::MixedSubstitutionModelSet::HyperNode::Node::operator= ( const Node &  n )

inline

Definition at line 139 of file MixedSubstitutionModelSet.h.

References vNumb_.

operator=() [2/2]

Node& bpp::MixedSubstitutionModelSet::HyperNode::Node::operator= ( const Vint &  n )

inline

Definition at line 147 of file MixedSubstitutionModelSet.h.

References vNumb_.

operator>=()

bool MixedSubstitutionModelSet::HyperNode::Node::operator>=

(

const Node &

n

)

const

checks if this HyperNode includes another one.

Definition at line 459 of file MixedSubstitutionModelSet.cpp.

operator[]()

int bpp::MixedSubstitutionModelSet::HyperNode::Node::operator[] ( size_t  i ) const

inline

Definition at line 188 of file MixedSubstitutionModelSet.h.

References vNumb_.

size()

size_t bpp::MixedSubstitutionModelSet::HyperNode::Node::size ( ) const

inline

Definition at line 155 of file MixedSubstitutionModelSet.h.

References vNumb_.

Referenced by bpp::MixedSubstitutionModelSet::complete(), bpp::MixedSubstitutionModelSet::computeHyperNodesProbabilities(), bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(), bpp::MixedSubstitutionModelSet::getHyperNodeProbability(), and bpp::RNonHomogeneousMixedTreeLikelihood::init().

Member Data Documentation

vNumb_

Vint bpp::MixedSubstitutionModelSet::HyperNode::Node::vNumb_

private

A vector<int> where all elements are different and in increasing order.

Definition at line 134 of file MixedSubstitutionModelSet.h.

Referenced by intersects(), operator+=(), operator<=(), operator=(), operator[](), and size().

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The documentation for this class was generated from the following files:

• Bpp/Phyl/Model/MixedSubstitutionModelSet.h
• Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp