bpp::RASTools Class Reference

Tools to deal with Rates Across Sites (RAS) models. More...

#include <Bpp/Phyl/Likelihood/RASTools.h>

Static Public Member Functions
static DiscreteDistribution *	getPosteriorRateDistribution (const DiscreteRatesAcrossSitesTreeLikelihood &treeLikelihood)
	Get the rate distribution estimated from a dataset. More...

Detailed Description

Tools to deal with Rates Across Sites (RAS) models.

Definition at line 55 of file RASTools.h.

Member Function Documentation

getPosteriorRateDistribution()

DiscreteDistribution * RASTools::getPosteriorRateDistribution ( const DiscreteRatesAcrossSitesTreeLikelihood &  treeLikelihood )

static

Get the rate distribution estimated from a dataset.

This methods takes an objet implementing the DiscreteRatesAcroossSites interface as input and use the posterior probabilities of rates for each site to generate the corresponding distribution.

Parameters

treeLikelihood

A Likelihood calculation implmenting the RAS model interface.

Returns

The posterior distribution of rate classes.

Definition at line 51 of file RASTools.cpp.

References bpp::DiscreteRatesAcrossSitesTreeLikelihood::getRateClassWithMaxPostProbOfEachSite(), and bpp::DiscreteRatesAcrossSitesTreeLikelihood::getRateDistribution().

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The documentation for this class was generated from the following files:

• Bpp/Phyl/Likelihood/RASTools.h
• Bpp/Phyl/Likelihood/RASTools.cpp