bpp::SiteSimulator Class Reference

The SiteSimulator interface. SiteSimulator classes can simulate single sites. More...

#include <Bpp/Phyl/Simulation/SiteSimulator.h>

Inheritance diagram for bpp::SiteSimulator:

Public Member Functions
	SiteSimulator ()
virtual	~SiteSimulator ()
virtual Site *	simulateSite () const =0
virtual Site *	simulateSite (size_t ancestralStateIndex) const =0
virtual Site *	simulateSite (size_t ancestralStateIndex, double rate) const =0
virtual Site *	simulateSite (double rate) const =0
virtual std::vector< std::string >	getSequencesNames () const =0
virtual const Alphabet *	getAlphabet () const =0

Detailed Description

The SiteSimulator interface. SiteSimulator classes can simulate single sites.

See also

SequenceSimulator interface for simulating whole sequence sets.

Definition at line 55 of file SiteSimulator.h.

Constructor & Destructor Documentation

SiteSimulator()

bpp::SiteSimulator::SiteSimulator ( )

inline

Definition at line 58 of file SiteSimulator.h.

~SiteSimulator()

virtual bpp::SiteSimulator::~SiteSimulator ( )

inlinevirtual

Definition at line 59 of file SiteSimulator.h.

Member Function Documentation

getAlphabet()

virtual const Alphabet* bpp::SiteSimulator::getAlphabet ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

getSequencesNames()

virtual std::vector<std::string> bpp::SiteSimulator::getSequencesNames ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

simulateSite() [1/4]

virtual Site* bpp::SiteSimulator::simulateSite ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

simulateSite() [2/4]

virtual Site* bpp::SiteSimulator::simulateSite ( size_t  ancestralStateIndex ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

simulateSite() [3/4]

virtual Site* bpp::SiteSimulator::simulateSite ( size_t  ancestralStateIndex, double  rate  ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

simulateSite() [4/4]

virtual Site* bpp::SiteSimulator::simulateSite ( double  rate ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Simulation/SiteSimulator.h