bpp::TreeLikelihood::ConstBranchModelDescription Class Reference

A pair of SubstitutionModel / SiteIterator. More...

#include <Bpp/Phyl/Likelihood/TreeLikelihood.h>

Inheritance diagram for bpp::TreeLikelihood::ConstBranchModelDescription:

Public Member Functions
virtual	~ConstBranchModelDescription ()
virtual const SubstitutionModel *	getModel () const =0
virtual SiteIterator *	getNewSiteIterator () const =0

Detailed Description

A pair of SubstitutionModel / SiteIterator.

Definition at line 113 of file TreeLikelihood.h.

Constructor & Destructor Documentation

~ConstBranchModelDescription()

virtual bpp::TreeLikelihood::ConstBranchModelDescription::~ConstBranchModelDescription ( )

inlinevirtual

Definition at line 116 of file TreeLikelihood.h.

Member Function Documentation

getModel()

virtual const SubstitutionModel* bpp::TreeLikelihood::ConstBranchModelDescription::getModel ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription.

Referenced by bpp::RewardMappingTools::computeRewardVectors(), bpp::SubstitutionMappingTools::computeSubstitutionVectors(), bpp::SubstitutionMappingTools::computeSubstitutionVectorsMarginal(), bpp::SubstitutionMappingTools::computeSubstitutionVectorsNoAveraging(), and bpp::SubstitutionMappingTools::computeSubstitutionVectorsNoAveragingMarginal().

getNewSiteIterator()

virtual SiteIterator* bpp::TreeLikelihood::ConstBranchModelDescription::getNewSiteIterator ( ) const

pure virtual

Implemented in bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelDescription.

Referenced by bpp::RewardMappingTools::computeRewardVectors(), bpp::SubstitutionMappingTools::computeSubstitutionVectors(), bpp::SubstitutionMappingTools::computeSubstitutionVectorsMarginal(), bpp::SubstitutionMappingTools::computeSubstitutionVectorsNoAveraging(), and bpp::SubstitutionMappingTools::computeSubstitutionVectorsNoAveragingMarginal().

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Likelihood/TreeLikelihood.h