44 #include "../AbstractSubstitutionModel.h" 46 #include <Bpp/Numeric/Constraints.h> 49 #include <Bpp/Seq/Alphabet/NucleicAlphabet.h> 80 std::auto_ptr<NucleotideSubstitutionModel>
model_;
102 #ifndef NOVIRTUAL_COV_ 112 std::string getName()
const;
116 void fireParameterChanged(
const ParameterList&);
120 void updateMatrices();
122 void setNamespace(
const std::string&);
Interface for all substitution models.
const SubstitutionModel * getNestedModel() const
size_t getNumberOfStates() const
Get the number of states.
std::auto_ptr< NucleotideSubstitutionModel > model_
Partial implementation of the SubstitutionModel interface.
Specialisation interface for nucleotide substitution model.
std::string nestedPrefix_