bpp::AbstractMafStatisticsSimple Class Reference

Partial implementation of MafStatistics, for convenience. More...

#include <Bpp/Seq/Io/Maf/MafStatistics.h>

Inheritance diagram for bpp::AbstractMafStatisticsSimple:

Collaboration diagram for bpp::AbstractMafStatisticsSimple:

Public Member Functions
	AbstractMafStatisticsSimple (const std::string &name)
virtual	~AbstractMafStatisticsSimple ()
const SimpleMafStatisticsResult &	getResult () const
std::vector< std::string >	getSupportedTags () const
virtual std::string	getShortName () const =0
virtual std::string	getFullName () const =0
virtual void	compute (const MafBlock &block)=0

Protected Attributes
SimpleMafStatisticsResult	result_

Detailed Description

Partial implementation of MafStatistics, for convenience.

Definition at line 245 of file MafStatistics.h.

Constructor & Destructor Documentation

AbstractMafStatisticsSimple()

bpp::AbstractMafStatisticsSimple::AbstractMafStatisticsSimple ( const std::string &  name )

inline

Definition at line 252 of file MafStatistics.h.

~AbstractMafStatisticsSimple()

virtual bpp::AbstractMafStatisticsSimple::~AbstractMafStatisticsSimple ( )

inlinevirtual

Definition at line 253 of file MafStatistics.h.

Member Function Documentation

compute()

virtual void bpp::MafStatistics::compute ( const MafBlock &  block )

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getFullName()

virtual std::string bpp::MafStatistics::getFullName ( ) const

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getResult()

const SimpleMafStatisticsResult& bpp::AbstractMafStatisticsSimple::getResult ( ) const

inlinevirtual

Implements bpp::MafStatistics.

Definition at line 256 of file MafStatistics.h.

References result_.

getShortName()

virtual std::string bpp::MafStatistics::getShortName ( ) const

pure virtualinherited

Implemented in bpp::SequenceDiversityMafStatistics, bpp::PolymorphismMafStatistics, bpp::SiteMafStatistics, bpp::FourSpeciesPatternCountsMafStatistics, bpp::SiteFrequencySpectrumMafStatistics, bpp::CharacterCountsMafStatistics, bpp::AlignmentScoreMafStatistics, bpp::SequenceLengthMafStatistics, bpp::BlockLengthMafStatistics, bpp::BlockSizeMafStatistics, and bpp::PairwiseDivergenceMafStatistics.

getSupportedTags()

std::vector<std::string> bpp::AbstractMafStatisticsSimple::getSupportedTags ( ) const

inlinevirtual

Returns

A vector with all available tags.

Implements bpp::MafStatistics.

Definition at line 257 of file MafStatistics.h.

References bpp::MafStatisticsResult::getAvailableTags(), and result_.

Member Data Documentation

result_

SimpleMafStatisticsResult bpp::AbstractMafStatisticsSimple::result_

protected

Definition at line 249 of file MafStatistics.h.

Referenced by bpp::BlockSizeMafStatistics::compute(), bpp::BlockLengthMafStatistics::compute(), bpp::SequenceLengthMafStatistics::compute(), bpp::AlignmentScoreMafStatistics::compute(), getResult(), and getSupportedTags().

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/MafStatistics.h