bpp::AlignmentScoreMafStatistics Class Reference

Retrieves the alignment score of a maf block. More...

#include <Bpp/Seq/Io/Maf/MafStatistics.h>

Inheritance diagram for bpp::AlignmentScoreMafStatistics:

Collaboration diagram for bpp::AlignmentScoreMafStatistics:

Public Member Functions
	AlignmentScoreMafStatistics ()
	~AlignmentScoreMafStatistics ()
std::string	getShortName () const
std::string	getFullName () const
void	compute (const MafBlock &block)
const SimpleMafStatisticsResult &	getResult () const
std::vector< std::string >	getSupportedTags () const

Protected Attributes
SimpleMafStatisticsResult	result_

Detailed Description

Retrieves the alignment score of a maf block.

Definition at line 353 of file MafStatistics.h.

Constructor & Destructor Documentation

AlignmentScoreMafStatistics()

bpp::AlignmentScoreMafStatistics::AlignmentScoreMafStatistics ( )

inline

Definition at line 357 of file MafStatistics.h.

~AlignmentScoreMafStatistics()

bpp::AlignmentScoreMafStatistics::~AlignmentScoreMafStatistics ( )

inline

Definition at line 358 of file MafStatistics.h.

Member Function Documentation

compute()

void bpp::AlignmentScoreMafStatistics::compute ( const MafBlock &  block )

inlinevirtual

Implements bpp::MafStatistics.

Definition at line 363 of file MafStatistics.h.

References bpp::MafBlock::getScore(), bpp::AbstractMafStatisticsSimple::result_, and bpp::SimpleMafStatisticsResult::setValue().

getFullName()

std::string bpp::AlignmentScoreMafStatistics::getFullName ( ) const

inlinevirtual

Implements bpp::MafStatistics.

Definition at line 362 of file MafStatistics.h.

getResult()

const SimpleMafStatisticsResult& bpp::AbstractMafStatisticsSimple::getResult ( ) const

inlinevirtualinherited

Implements bpp::MafStatistics.

Definition at line 256 of file MafStatistics.h.

References bpp::AbstractMafStatisticsSimple::result_.

getShortName()

std::string bpp::AlignmentScoreMafStatistics::getShortName ( ) const

inlinevirtual

Implements bpp::MafStatistics.

Definition at line 361 of file MafStatistics.h.

getSupportedTags()

std::vector<std::string> bpp::AbstractMafStatisticsSimple::getSupportedTags ( ) const

inlinevirtualinherited

Returns

A vector with all available tags.

Implements bpp::MafStatistics.

Definition at line 257 of file MafStatistics.h.

References bpp::MafStatisticsResult::getAvailableTags(), and bpp::AbstractMafStatisticsSimple::result_.

Member Data Documentation

result_

SimpleMafStatisticsResult bpp::AbstractMafStatisticsSimple::result_

protectedinherited

Definition at line 249 of file MafStatistics.h.

Referenced by bpp::BlockSizeMafStatistics::compute(), bpp::BlockLengthMafStatistics::compute(), bpp::SequenceLengthMafStatistics::compute(), compute(), bpp::AbstractMafStatisticsSimple::getResult(), and bpp::AbstractMafStatisticsSimple::getSupportedTags().

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/MafStatistics.h