40 #ifndef _AACHARGEINDEX_H_ 41 #define _AACHARGEINDEX_H_ 44 #include "../Alphabet/ProteicAlphabet.h" 45 #include "../Alphabet/AlphabetTools.h" 136 return charge_[
static_cast<size_t>(state)];
150 #endif // _AACHARGEINDEX_H_ An alphabet exception thrown when trying to specify a bad char to the alphabet.
const Alphabet * getAlphabet() const
Get the alphabet associated to this index.
AAChargeIndex * clone() const
This alphabet is used to deal NumericAlphabet.
One dimensionnal alphabet index interface.
Charge of each amino acid.
std::vector< double > charge_
std::vector< double > * getIndexVector() const
double getIndex(const std::string &state) const
Get the index associated to a state.
An alphabet exception thrown when trying to specify a bad int to the alphabet.
double getIndex(int state) const
Get the index associated to a state.
int charToInt(const std::string &state) const
Give the int description of a state given its string description.