double getIndex(int state1, int state2) const
Get the index associated to a pair of states.
AAIndex2Entry(std::istream &input, bool sym=true)
Create a new AAIndex2Entry from an input stream.
const Alphabet * getAlphabet() const
Get the alphabet associated to this index.
Create a AlphabetIndex2 object from an AAIndex2 entry.
LinearMatrix< double > property_
double getIndex(const std::string &state1, const std::string &state2) const
Get the index associated to a pair of states.
LinearMatrix< double > * getIndexMatrix() const
AAIndex2Entry & operator=(const AAIndex2Entry &index)
AAIndex2Entry * clone() const
const ProteicAlphabet * alpha_