40 #ifndef _AAVOLUMEINDEX_H_ 41 #define _AAVOLUMEINDEX_H_ 44 #include "../Alphabet/ProteicAlphabet.h" 45 #include "../Alphabet/AlphabetTools.h" 95 return volume_[
static_cast<size_t>(state)];
109 #endif // _AAVOLUMEINDEX_H_ An alphabet exception thrown when trying to specify a bad char to the alphabet.
This alphabet is used to deal NumericAlphabet.
std::vector< double > * getIndexVector() const
One dimensionnal alphabet index interface.
AAVolumeIndex * clone() const
const Alphabet * getAlphabet() const
Get the alphabet associated to this index.
An alphabet exception thrown when trying to specify a bad int to the alphabet.
std::vector< double > volume_
double getIndex(const std::string &state) const
Get the index associated to a state.
Volume (Angström^3) of each amino acid, according to http://www.imb-jena.de/IMAGE_AA.html.
double getIndex(int state) const
Get the index associated to a state.
int charToInt(const std::string &state) const
Give the int description of a state given its string description.