bpp-seq  2.2.0
AlphabetNumericState.h
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1 //
2 // File: AlphabetState.h
3 // Author: Laurent Guéguen
4 // Created: 03/2010
5 //
6 
7 /*
8  Copyright or © or Copr. Bio++ Development Team, (March, 2010)
9 
10  This software is a computer program whose purpose is to provide classes
11  for sequences analysis.
12 
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14  abiding by the rules of distribution of free software. You can use,
15  modify and/ or redistribute the software under the terms of the CeCILL
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17  "http://www.cecill.info".
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38 */
39 
40 #ifndef _ALPHABETNUMERICSTATE_H_
41 #define _ALPHABETNUMERICSTATE_H_
42 
43 // From the STL
44 #include <string>
45 
46 // From bpp-core
47 #include <Bpp/Clonable.h>
48 
49 // From bpp-seq
50 
51 #include "AlphabetState.h"
52 
53 namespace bpp {
60  private:
61  double value_;
62 
63  public:
64  AlphabetNumericState(int num, double value, const std::string& letter, const std::string& name): AlphabetState(num, letter, name), value_(value) {}
65 
66  // Class destructor
67  virtual ~AlphabetNumericState() {}
68 
69  public:
74 #ifdef NO_VIRTUAL_COV
75  Clonable*
76 #else
78 #endif
79  clone() const { return new AlphabetNumericState(* this); }
86  double getValue() const { return value_; }
87 
92  void setValue(double value) { value_ = value; }
93 
94  };
95 }
96 
97 #endif // _ALPHABETNUMERICSTATE_H_
98 
This is the base class to describe states in an Alphabet.
Definition: AlphabetState.h:54
This alphabet is used to deal NumericAlphabet.
AlphabetNumericState * clone() const
AlphabetNumericState(int num, double value, const std::string &letter, const std::string &name)
void setValue(double value)
Set the state value.
States that do have a double value.
double getValue() const
Get the state value.