This is the complete list of members for bpp::Fasta, including all inherited members.

AbstractIAlignment()	bpp::AbstractIAlignment	inline
AbstractISequence()	bpp::AbstractISequence	inline
AbstractOSequence()	bpp::AbstractOSequence	inline
appendAlignmentFromFile(const std::string &path, SiteContainer &sc) const	bpp::AbstractIAlignment	inlineprotectedvirtual
appendAlignmentFromStream(std::istream &input, SiteContainer &sc) const	bpp::Fasta	inlinevirtual
appendSequencesFromFile(const std::string &path, SequenceContainer &sc) const	bpp::AbstractISequence	inlineprotectedvirtual
appendSequencesFromStream(std::istream &input, SequenceContainer &sc) const	bpp::Fasta	virtual
charsByLine_	bpp::Fasta	private
checkNames() const	bpp::Fasta	inline
checkNames(bool yn)	bpp::Fasta	inline
checkNames_	bpp::Fasta	private
extended_	bpp::Fasta	private
Fasta(unsigned int charsByLine=100, bool checkSequenceNames=true, bool extended=false, bool strictSequenceNames=false)	bpp::Fasta	inline
getDataType() const	bpp::IOSequence	inline
getFormatDescription() const	bpp::Fasta	inline
getFormatName() const	bpp::Fasta	inline
IAlignment()	bpp::IAlignment	inline
IOSequence()	bpp::IOSequence	inline
IOSequenceStream()	bpp::IOSequenceStream	inline
ISequence()	bpp::ISequence	inline
ISequenceStream()	bpp::ISequenceStream	inline
nextSequence(std::istream &input, Sequence &seq) const	bpp::Fasta	virtual
OAlignment()	bpp::OAlignment	inline
OSequence()	bpp::OSequence	inline
OSequenceStream()	bpp::OSequenceStream	inline
readAlignment(std::istream &input, SiteContainer &sc) const	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, SiteContainer &sc) const	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, const Alphabet *alpha) const	bpp::AbstractIAlignment	inlinevirtual
readAlignment(std::istream &input, const Alphabet *alpha) const	bpp::AbstractIAlignment	inlinevirtual
readAlignmentFromFile(const std::string &path, const Alphabet *alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
readAlignmentFromStream(std::istream &input, const Alphabet *alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
readSequences(std::istream &input, SequenceContainer &sc) const	bpp::AbstractISequence	inlinevirtual
readSequences(const std::string &path, SequenceContainer &sc) const	bpp::AbstractISequence	inlinevirtual
readSequences(std::istream &input, const Alphabet *alpha) const	bpp::AbstractISequence	inlinevirtual
readSequences(const std::string &path, const Alphabet *alpha) const	bpp::AbstractISequence	inlinevirtual
readSequencesFromFile(const std::string &path, const Alphabet *alpha) const	bpp::AbstractISequence	inlineprotectedvirtual
readSequencesFromStream(std::istream &input, const Alphabet *alpha) const	bpp::AbstractISequence	inlineprotectedvirtual
strictNames() const	bpp::Fasta	inline
strictNames(bool yn)	bpp::Fasta	inline
strictNames_	bpp::Fasta	private
writeAlignment(std::ostream &output, const SiteContainer &sc) const	bpp::AbstractOSequence	inlinevirtual
writeAlignment(const std::string &path, const SiteContainer &sc, bool overwrite=true) const	bpp::AbstractOSequence	inlinevirtual
writeSequence(std::ostream &output, const Sequence &seq) const	bpp::Fasta	virtual
writeSequences(std::ostream &output, const SequenceContainer &sc) const	bpp::Fasta	virtual
writeSequences(const std::string &path, const SequenceContainer &sc, bool overwrite=true) const	bpp::Fasta	inlinevirtual
~AbstractIAlignment()	bpp::AbstractIAlignment	inlinevirtual
~AbstractISequence()	bpp::AbstractISequence	inlinevirtual
~AbstractOSequence()	bpp::AbstractOSequence	inlinevirtual
~Fasta()	bpp::Fasta	inlinevirtual
~IAlignment()	bpp::IAlignment	inlinevirtual
~IOSequence()	bpp::IOSequence	inlinevirtual
~IOSequenceStream()	bpp::IOSequenceStream	inlinevirtual
~ISequence()	bpp::ISequence	inlinevirtual
~ISequenceStream()	bpp::ISequenceStream	inlinevirtual
~OAlignment()	bpp::OAlignment	inlinevirtual
~OSequence()	bpp::OSequence	inlinevirtual
~OSequenceStream()	bpp::OSequenceStream	inlinevirtual