micca
1.7

Getting Started

  • Install
  • Supported databases

Tutorials

  • Paired-end sequencing - 97% OTU
  • Denoising (Illumina only)
  • Single-end sequencing
  • An introduction to the downstream analysis with R and phyloseq
  • Compute basic statistics, rarefy and summarize OTU/SV tables using micca
  • Picking OTUs for use in PICRUSt

In Depth

  • OTU picking and Denoising
  • Supported file formats
  • Changes

Command reference

  • classify
  • convert
  • filter
  • filterstats
  • merge
  • mergepairs
  • msa
  • otu
  • root
  • split
  • stats
  • tablebar
  • tablerare
  • tablestats
  • tabletotax
  • tobiom
  • tree
  • trim
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