43 #include "../AbstractBiblioSubstitutionModel.h" 45 #include <Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h> 88 GranthamAAChemicalDistance
gacd_;
89 std::auto_ptr<CodonDistanceFrequenciesSubstitutionModel>
pmodel_;
100 #ifndef NOVIRTUAL_COV_ 109 std::string
getName()
const {
return "GY94"; }
Interface for all substitution models.
GY94 & operator=(const GY94 &gy94)
SubstitutionModel & getModel()
Partial implementation of the SubstitutionModel interface for models that are set for matching the bi...
GY94(const GeneticCode *gc, FrequenciesSet *codonFreqs)
The Goldman and Yang (1994) substitution model for codons.
std::string getName() const
Get the name of the model.
Parametrize a set of state frequencies.
std::auto_ptr< CodonDistanceFrequenciesSubstitutionModel > pmodel_
Interface for reversible substitution models.
const SubstitutionModel & getModel() const
GranthamAAChemicalDistance gacd_