42 #ifndef _SEQUENCETOOLS_H_ 43 #define _SEQUENCETOOLS_H_ 53 #include <Bpp/Exceptions.h> 54 #include <Bpp/Numeric/Random/RandomTools.h> 55 #include <Bpp/Numeric/Stat/StatTest.h> 84 std::string
getName()
const {
return "Bowker's test for homogeneity."; }
122 static Sequence*
subseq(
const Sequence& sequence,
size_t begin,
size_t end)
throw (IndexOutOfBoundsException, Exception);
409 static
void getCDS(
Sequence& sequence, const
GeneticCode& gCode,
bool checkInit,
bool checkStop,
bool includeInit = true,
bool includeStop = true);
434 #endif // _SEQUENCETOOLS_H_
BowkerTest * clone() const
This alphabet is used to deal NumericAlphabet.
std::string getName() const
void setPValue(double pvalue)
The alphabet exception base class.
This alphabet is used to deal with DNA sequences.
This alphabet is used to deal with RNA sequences.
Partial implementation of the Transliterator interface for genetic code object.
Exception thrown when two alphabets do not match.
Bowker's homogeneity test results class.
Replication between to nucleic acids.
Exception thrown when a sequence is not align with others.
void setStatistic(double stat)
double getStatistic() const