Index

A

angle_coeff angle_style angle_style charmm angle_style class2 angle_style cosine angle_style cosine/buck6d angle_style cosine/delta angle_style cosine/periodic angle_style cosine/shift angle_style cosine/shift/exp angle_style cosine/squared angle_style cross

angle_style dipole angle_style fourier angle_style fourier/simple angle_style harmonic angle_style hybrid angle_style mm3 angle_style none angle_style quartic angle_style sdk angle_style table angle_style zero atom_modify atom_style

B

balance bond_coeff bond_style bond_style class2 bond_style fene bond_style fene/expand bond_style gromos bond_style harmonic bond_style harmonic/shift bond_style harmonic/shift/cut bond_style hybrid

bond_style mm3 bond_style morse bond_style none bond_style nonlinear bond_style oxdna/fene bond_style quartic bond_style table bond_style zero bond_write boundary box

C

change_box clear comm_modify comm_style compute compute ackland/atom compute adf compute angle compute angle/local compute angmom/chunk compute basal/atom compute body/local compute bond compute bond/local compute centro/atom compute chunk/atom compute chunk/spread/atom compute cluster/atom compute cna/atom compute cnp/atom compute com compute com/chunk compute contact/atom compute coord/atom compute damage/atom compute dihedral compute dihedral/local compute dilatation/atom compute dipole/chunk compute displace/atom compute dpd compute dpd/atom compute edpd/temp/atom compute entropy/atom compute erotate/asphere compute erotate/rigid compute erotate/sphere compute erotate/sphere/atom compute event/displace compute fep compute force/tally compute global/atom compute group/group compute gyration compute gyration/chunk compute gyration/shape compute gyration/shape/chunk compute heat/flux compute hexorder/atom compute hma compute improper compute improper/local compute inertia/chunk compute ke compute ke/atom compute ke/atom/eff compute ke/eff compute ke/rigid compute meso/e/atom compute meso/rho/atom compute meso/t/atom compute momentum compute msd compute msd/chunk compute msd/nongauss compute omega/chunk compute orientorder/atom compute pair compute pair/local

compute pe compute pe/atom compute plasticity/atom compute pressure compute pressure/cylinder compute pressure/uef compute property/atom compute property/chunk compute property/local compute ptm/atom compute rdf compute reduce compute reduce/chunk compute rigid/local compute saed compute slice compute smd/contact/radius compute smd/damage compute smd/hourglass/error compute smd/internal/energy compute smd/plastic/strain compute smd/plastic/strain/rate compute smd/rho compute smd/tlsph/defgrad compute smd/tlsph/dt compute smd/tlsph/num/neighs compute smd/tlsph/shape compute smd/tlsph/strain compute smd/tlsph/strain/rate compute smd/tlsph/stress compute smd/triangle/vertices compute smd/ulsph/num/neighs compute smd/ulsph/strain compute smd/ulsph/strain/rate compute smd/ulsph/stress compute smd/vol compute sna/atom compute spin compute stress/atom compute stress/mop compute tdpd/cc/atom compute temp compute temp/asphere compute temp/body compute temp/chunk compute temp/com compute temp/cs compute temp/deform compute temp/deform/eff compute temp/drude compute temp/eff compute temp/partial compute temp/profile compute temp/ramp compute temp/region compute temp/region/eff compute temp/rotate compute temp/sphere compute temp/uef compute ti compute torque/chunk compute vacf compute vcm/chunk compute voronoi/atom compute xrd compute_modify create_atoms create_bonds create_box

D

delete_atoms delete_bonds dielectric dihedral_coeff dihedral_style dihedral_style charmm dihedral_style class2 dihedral_style cosine/shift/exp dihedral_style fourier dihedral_style harmonic dihedral_style helix dihedral_style hybrid dihedral_style multi/harmonic dihedral_style nharmonic dihedral_style none dihedral_style opls dihedral_style quadratic

dihedral_style spherical dihedral_style table dihedral_style table/cut dihedral_style zero dimension displace_atoms dump dump atom/adios dump cfg/uef dump custom/adios dump h5md dump image dump molfile dump netcdf dump vtk dump_modify dynamical_matrix

E

echo

F

find_compute_neighlist() (lammps.lammps method) find_fix_neighlist() (lammps.lammps method) find_pair_neighlist() (lammps.lammps method) fix fix adapt fix adapt/fep fix addforce fix addtorque fix append/atoms fix atc fix atom/swap fix ave/atom fix ave/chunk fix ave/correlate fix ave/correlate/long fix ave/histo fix ave/time fix aveforce fix balance fix bocs fix bond/break fix bond/create fix bond/react fix bond/swap fix box/relax fix client/md fix cmap fix colvars fix controller fix deform fix deposit fix dpd/energy fix drag fix drude fix drude/transform/direct fix dt/reset fix edpd/source fix efield fix ehex fix electron/stopping fix enforce2d fix eos/cv fix eos/table fix eos/table/rx fix evaporate fix external fix ffl fix filter/corotate fix flow/gauss fix freeze fix gcmc fix gld fix gle fix gravity fix grem fix halt fix heat fix hyper/global fix hyper/local fix imd fix indent fix ipi fix langevin fix langevin/drude fix langevin/eff fix langevin/spin fix latte fix lb/fluid fix lb/momentum fix lb/pc fix lb/rigid/pc/sphere fix lb/viscous fix lineforce fix manifoldforce fix meso fix meso/move fix meso/stationary fix momentum fix move fix mscg fix msst fix mvv/dpd fix neb fix neb/spin fix nph/asphere fix nph/body fix nph/sphere fix nphug fix npt/asphere fix npt/body fix npt/cauchy fix npt/sphere fix nve fix nve/asphere

fix nve/asphere/noforce fix nve/awpmd fix nve/body fix nve/dot fix nve/dotc/langevin fix nve/eff fix nve/limit fix nve/line fix nve/manifold/rattle fix nve/noforce fix nve/sphere fix nve/spin fix nve/tri fix nvk fix nvt fix nvt/asphere fix nvt/body fix nvt/eff fix nvt/manifold/rattle fix nvt/sllod fix nvt/sllod/eff fix nvt/sphere fix nvt/uef fix oneway fix orient/fcc fix phonon fix pimd fix planeforce fix plumed fix poems fix pour fix precession/spin fix press/berendsen fix print fix propel/self fix property/atom fix python/invoke fix python/move fix qbmsst fix qeq/comb fix qeq/point fix qeq/reax fix qmmm fix qtb fix reax/c/bonds fix reax/c/species fix recenter fix restrain fix rhok fix rigid fix rigid/meso fix rx fix saed/vtk fix setforce fix shake fix shardlow fix smd fix smd/adjust_dt fix smd/integrate_tlsph fix smd/integrate_ulsph fix smd/move_tri_surf fix smd/setvel fix smd/wall_surface fix spring fix spring/chunk fix spring/rg fix spring/self fix srd fix store/force fix store/state fix temp/berendsen fix temp/csvr fix temp/rescale fix temp/rescale/eff fix tfmc fix thermal/conductivity fix ti/spring fix tmd fix ttm fix tune/kspace fix vector fix viscosity fix viscous fix wall/body/polygon fix wall/body/polyhedron fix wall/ees fix wall/gran fix wall/gran/region fix wall/lj93 fix wall/piston fix wall/reflect fix wall/reflect/stochastic fix wall/region fix wall/srd fix_modify

G

get() (lammps.NeighList method) get_neighlist() (lammps.lammps method) get_neighlist_element_neighbors() (lammps.lammps method)

get_neighlist_size() (lammps.lammps method) group group2ndx

H

has_exceptions() (lammps.lammps property)

hyper

I

if improper_coeff improper_style improper_style class2 improper_style cossq improper_style cvff improper_style distance improper_style distharm improper_style fourier

improper_style harmonic improper_style hybrid improper_style inversion/harmonic improper_style none improper_style ring improper_style sqdistharm improper_style umbrella improper_style zero include info

J

jump

K

kim_init kim_interactions kim_param

kim_query kspace_modify kspace_style

L

label lammps (class in lammps)

lattice log

M

mass message min_modify

min_style min_style spin minimize molecule

N

neb neb/spin neigh_modify

neighbor NeighList (class in lammps) newton next

P

package pair_coeff pair_modify pair_style pair_style adp pair_style agni pair_style airebo pair_style atm pair_style awpmd/cut pair_style beck pair_style body/nparticle pair_style body/rounded/polygon pair_style body/rounded/polyhedron pair_style bop pair_style born pair_style born/coul/dsf/cs pair_style brownian pair_style buck pair_style buck/long/coul/long pair_style buck6d/coul/gauss/dsf pair_style colloid pair_style comb pair_style cosine/squared pair_style coul/cut pair_style coul/diel pair_style coul/shield pair_style dpd pair_style dpd/fdt pair_style drip pair_style dsmc pair_style e3b pair_style eam pair_style edip pair_style edpd pair_style eff/cut pair_style eim pair_style exp6/rx pair_style extep pair_style gauss pair_style gayberne pair_style gran/hooke pair_style granular pair_style gw pair_style hbond/dreiding/lj pair_style hybrid pair_style ilp/graphene/hbn pair_style kim pair_style kolmogorov/crespi/full pair_style kolmogorov/crespi/z pair_style lcbop pair_style lebedeva/z pair_style line/lj pair_style list pair_style lj/charmm/coul/charmm pair_style lj/class2 pair_style lj/cubic pair_style lj/cut pair_style lj/cut/dipole/cut pair_style lj/cut/soft pair_style lj/expand pair_style lj/gromacs pair_style lj/long/coul/long pair_style lj/mdf pair_style lj/sdk pair_style lj/smooth pair_style lj/smooth/linear pair_style lj/switch3/coulgauss/long

pair_style lj96/cut pair_style local/density pair_style lubricate pair_style lubricateU pair_style meam/c pair_style meam/spline pair_style meam/sw/spline pair_style mesocnt pair_style mgpt pair_style mie/cut pair_style mm3/switch3/coulgauss/long pair_style momb pair_style morse pair_style multi/lucy pair_style multi/lucy/rx pair_style nb3b/harmonic pair_style nm/cut pair_style none pair_style oxdna/excv pair_style oxdna2/excv pair_style oxrna2/excv pair_style peri/pmb pair_style polymorphic pair_style python pair_style quip pair_style reax/c pair_style resquared pair_style sdpd/taitwater/isothermal pair_style smd/hertz pair_style smd/tlsph pair_style smd/tri_surface pair_style smd/ulsph pair_style smtbq pair_style snap pair_style soft pair_style sph/heatconduction pair_style sph/idealgas pair_style sph/lj pair_style sph/rhosum pair_style sph/taitwater pair_style sph/taitwater/morris pair_style spin/dipole/cut pair_style spin/dmi pair_style spin/exchange pair_style spin/magelec pair_style spin/neel pair_style srp pair_style sw pair_style table pair_style table/rx pair_style tersoff pair_style tersoff/mod pair_style tersoff/zbl pair_style thole pair_style tri/lj pair_style ufm pair_style vashishta pair_style yukawa pair_style yukawa/colloid pair_style zbl pair_style zero pair_write partition prd print processors python

Q

quit

R

read_data read_dump read_restart region replicate

rerun reset_ids reset_timestep restart run run_style

S

server server mc server md set

shell size() (lammps.NeighList property) special_bonds suffix

T

tad temper temper/grem temper/npt thermo

thermo_modify thermo_style third_order timer timestep

U

uncompute undump

unfix units

V

variable

velocity

W

write_coeff write_data

write_dump write_restart