#include "BppOSubstitutionModelFormat.h"
#include "BppORateDistributionFormat.h"
#include <Bpp/Io/FileTools.h>
#include <Bpp/Text/TextTools.h>
#include <Bpp/Text/StringTokenizer.h>
#include <Bpp/Text/KeyvalTools.h>
#include "../Model/Codon/MG94.h"
#include "../Model/Codon/GY94.h"
#include "../Model/Codon/YNGKP_M1.h"
#include "../Model/Codon/YNGKP_M2.h"
#include "../Model/Codon/YNGKP_M3.h"
#include "../Model/Codon/YNGKP_M7.h"
#include "../Model/Codon/YNGKP_M8.h"
#include "../Model/Codon/YN98.h"
#include "../Model/Codon/TripletSubstitutionModel.h"
#include "../Model/Codon/CodonRateSubstitutionModel.h"
#include "../Model/Codon/CodonDistanceSubstitutionModel.h"
#include "../Model/Codon/CodonRateFrequenciesSubstitutionModel.h"
#include "../Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h"
#include "../Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h"
#include "../Model/Codon/CodonDistanceFitnessPhaseFrequenciesSubstitutionModel.h"
#include "../Model/RE08.h"
#include "../Model/TS98.h"
#include "../Model/G2001.h"
#include "../Model/Nucleotide/F84.h"
#include "../Model/Nucleotide/NucleotideSubstitutionModel.h"
#include "../Model/Nucleotide/gBGC.h"
#include "../Model/Nucleotide/RN95.h"
#include "../Model/Nucleotide/GTR.h"
#include "../Model/Nucleotide/RN95s.h"
#include "../Model/Nucleotide/HKY85.h"
#include "../Model/Nucleotide/SSR.h"
#include "../Model/Nucleotide/JCnuc.h"
#include "../Model/Nucleotide/T92.h"
#include "../Model/Nucleotide/K80.h"
#include "../Model/Nucleotide/TN93.h"
#include "../Model/Nucleotide/L95.h"
#include "../Model/Nucleotide/YpR.h"
#include "../Model/Protein/CoalaCore.h"
#include "../Model/Protein/LLG08_EX2.h"
#include "../Model/Protein/Coala.h"
#include "../Model/Protein/LLG08_EX3.h"
#include "../Model/Protein/DSO78.h"
#include "../Model/Protein/LLG08_UL2.h"
#include "../Model/Protein/JCprot.h"
#include "../Model/Protein/LLG08_UL3.h"
#include "../Model/Protein/JTT92.h"
#include "../Model/Protein/ProteinSubstitutionModel.h"
#include "../Model/Protein/LG08.h"
#include "../Model/Protein/UserProteinSubstitutionModel.h"
#include "../Model/Protein/LGL08_CAT.h"
#include "../Model/Protein/WAG01.h"
#include "../Model/Protein/LLG08_EHO.h"
#include "../Model/Protein/LG10_EX_EHO.h"
#include "../Model/BinarySubstitutionModel.h"
#include "../App/PhylogeneticsApplicationTools.h"
#include "BppOFrequenciesSetFormat.h"
#include <Bpp/Seq/App/SequenceApplicationTools.h>
#include <Bpp/Seq/Alphabet/AlphabetTools.h>
#include <Bpp/Io/OutputStream.h>
#include <Bpp/Io/BppOParametrizableFormat.h>
#include <Bpp/Io/BppODiscreteDistributionFormat.h>
#include <Bpp/Numeric/Prob/ConstantDistribution.h>
#include <Bpp/Numeric/AutoParameter.h>
#include <iomanip>

Include dependency graph for BppOSubstitutionModelFormat.cpp: